Description

Concatenate VCF files

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

vcfs:list

List containing 2 or more vcf files e.g. [ ‘file1.vcf’, ‘file2.vcf’ ]

tbi:list

List containing 2 or more index files (optional) e.g. [ ‘file1.tbi’, ‘file2.tbi’ ]

Output

name:type
description
pattern

vcf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.{vcf.gz}

${prefix}.vcf.gz:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.{vcf.gz}

tbi

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tbi

${prefix}.vcf.gz.tbi:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tbi

csi

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.csi

${prefix}.vcf.gz.csi:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.csi

versions

versions.yml:file

File containing software versions

versions.yml