Description

Compresses VCF files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

VCF file

*.{vcf}

tbi (file)

tabix index file

*.{tbi}

fasta (file)

FASTA reference file

*.{fasta,fa}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

FASTA reference consensus file

*.{fasta,fa}

versions (file)

File containing software versions

versions.yml

Tools

consensus
MIT

Create consensus sequence by applying VCF variants to a reference fasta file.