Description

Filters VCF files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

VCF input file

*.{vcf,bcf,vcf.gz,bcf.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

VCF filtered output file

*.{vcf,bcf,vcf.gz,bcf.gz}

csi (file)

Default VCF file index

*.csi

tbi (file)

Alternative VCF file index

*.tbi

versions (file)

File containing software versions

versions.yml