Description

Apply set operations to VCF files

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

vcfs:list

List containing 2 or more vcf/bcf files. These must be compressed and have an associated index. e.g. [ ‘file1.vcf.gz’, ‘file2.vcf’ ]

tbis:list

List containing the tbi index files corresponding to the vcf/bcf input files e.g. [ ‘file1.vcf.tbi’, ‘file2.vcf.tbi’ ]

Output

name:type
description
pattern

results

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}", type: "dir:directory

Folder containing the set operations results perform on the vcf files

${prefix}

versions

versions.yml:file

File containing software versions

versions.yml