Normalize VCF file
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf
The vcf file to be normalized e.g. ‘file1.vcf’
*.{vcf,vcf.gz}
tbi
An optional index of the VCF file (for when the VCF is compressed)
*.vcf.gz.tbi
meta2
Groovy Map containing reference information e.g. [ id:‘genome’ ]
fasta
FASTA reference file
*.{fasta,fa}
One of uncompressed VCF (.vcf), compressed VCF (.vcf.gz), compressed BCF (.bcf.gz) or uncompressed BCF (.bcf) normalized output file
*.{vcf,vcf.gz,bcf,bcf.gz}
csi
Default VCF file index
*.csi
Alternative VCF file index
*.tbi
versions
File containing software versions
versions.yml
Normalize VCF files.
