Normalize VCF file
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf:file
The vcf file to be normalized e.g. ‘file1.vcf’
*.{vcf,vcf.gz}
tbi:file
An optional index of the VCF file (for when the VCF is compressed)
*.vcf.gz.tbi
meta2:map
Groovy Map containing reference information e.g. [ id:‘genome’ ]
fasta:file
FASTA reference file
*.{fasta,fa}
vcf
*.{vcf,vcf.gz,bcf,bcf.gz}:file
One of uncompressed VCF (.vcf), compressed VCF (.vcf.gz), compressed BCF (.bcf.gz) or uncompressed BCF (.bcf) normalized output file
*.{vcf,vcf.gz,bcf,bcf.gz}
tbi
*.tbi:file
Alternative VCF file index
*.tbi
csi
*.csi:file
Default VCF file index
*.csi
versions
versions.yml:file
File containing software versions
versions.yml
Normalize VCF files.
