modules/bcftools_pluginscatter

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

The input VCF to scatter

Optional index of the input VCF

How many variants should be in each output file
Either this or scatter or scatter_file have to be given

A comma delimited list of regions to scatter into
Either this or sites_per_chunk or scatter_file have to be given

A file containing a region on each line with an optional second column containing the filename
Either this or sites_per_chunk or scatter have to be given

Optional file containing the regions to work on

Optional file containing the regions to work on (but streams instead of index-jumping)