Extracts fields from VCF or BCF files and outputs them in user-defined format.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf
The vcf file to be qeuried.
*.{vcf.gz, vcf}
tbi
The tab index for the VCF file to be inspected.
*.tbi
regions
Optionally, restrict the operation to regions listed in this file.
targets
Optionally, restrict the operation to regions listed in this file (doesn’t rely upon index files)
samples
Optional, file of sample names to be included or excluded. e.g. ‘file.tsv’
output
BCFTools query output file
versions
File containing software versions
versions.yml
