Reheader a VCF file
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcf
VCF/BCF file
*.{vcf.gz,vcf,bcf}
header
New header to add to the VCF
*.{header.txt}
samples
File containing sample names to update (one sample per line)
*.{samples.txt}
meta2
Groovy Map containing reference information e.g. [ id:‘genome’ ]
fai
Fasta index to update header sequences with
*.{fai}
versions
File containing software versions
versions.yml
VCF with updated header, bgzipped per default
*.{vcf,vcf.gz,bcf,bcf.gz}
Modify header of VCF/BCF files, change sample names.
