Reheader a VCF file
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf:file
VCF/BCF file
*.{vcf.gz,vcf,bcf}
header:file
New header to add to the VCF
*.{header.txt}
samples:file
File containing sample names to update (one sample per line)
*.{samples.txt}
meta2:map
Groovy Map containing reference information e.g. [ id:‘genome’ ]
fai:file
Fasta index to update header sequences with
*.{fai}
vcf
*.{vcf,vcf.gz,bcf,bcf.gz}:file
VCF with updated header, bgzipped per default
*.{vcf,vcf.gz,bcf,bcf.gz}
index
*.{csi,tbi}:file
Index of VCF with updated header
*.{csi,tbi}
versions
versions.yml:file
File containing software versions
versions.yml
Modify header of VCF/BCF files, change sample names.
