Description

Sorts VCF files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

The VCF/BCF file to be sorted

*.{vcf.gz,vcf,bcf}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

vcf (file)

Sorted VCF file

*.{vcf.gz}

csi (file)

Default VCF file index

*.csi

tbi (file)

Alternative VCF file index

*.tbi
included in
nanoseq radseq raredisease rnadnavar sarek variantbenchmarking viralrecon
maintainer
Github user Gwennid
get in touch
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