Split a vcf file into files per chromosome
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
Compressed vcf file
*.vcf.gz
tbi{:bash}
Compressed vcf file index
*.{tbi,csi}
split_vcf{:bash}
*.vcf.gz{:bash}
Compressed vcf files per chromosome
versions_bcftools{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
bcftools{:bash}
The tool name
bcftools --version | sed '1!d; s/^.*bcftools //'{:bash}
The command used to generate the version of the tool
versions{:bash}
Sort VCF files by coordinates.
