Description

Split a vcf file into files per chromosome

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

vcf{:bash}

:file

Compressed vcf file

*.vcf.gz

tbi{:bash}

:file

Compressed vcf file index

*.{tbi,csi}

Output

name:type
description
pattern

split_vcf{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.vcf.gz{:bash}

:file

Compressed vcf files per chromosome

*.vcf.gz

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml