Convert a BED file to a VCF file according to a YAML config
meta:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
bed:file
The BED file to convert to VCF
*.bed
config:file
The config file to use for the conversion
*.{yml,yaml}
meta2:map
Groovy Map containing fasta index information e.g. [ id:'test', single_end:false ]
fai:file
The fasta index file
*.fai
vcf
*.vcf.gz:file
The converted VCF file
*.vcf.gz
versions
versions.yml:file
File containing software versions
versions.yml
A simple tool to convert BED files to VCF files
