Description

Convert BAM/GFF/GTF/GVF/PSL files to bed

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

in_file{:bash}

:file

Input file

Output

name:type
description
pattern

bed{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.bed{:bash}

:file

Sorted BED file

*.{bed}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml