Convert BAM/GFF/GTF/GVF/PSL files to bed
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
in_file{:bash}
:file
Input file
bed{:bash}
*.bed{:bash}
Sorted BED file
*.{bed}
versions_bedops{:bash}
${task.process}{:bash}
:string
The name of the process
bedops{:bash}
The name of the tool
convert2bed --version | sed -n "s/.*version: *\([^ ]*\).*/\1/p"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
High-performance genomic feature operations.
