Description

Convert BAM/GFF/GTF/GVF/PSL files to bed

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

input (file)

Sorted BAM/GFF/GTF/GVF/PSL file

*.{bam,gff,gtf,gvf,psl}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

versions (file)

File containing software versions

versions.yml

bed (file)

Sorted BED file

*.{bed}
maintainer
Github user rannick
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