Description

Convert BAM/GFF/GTF/GVF/PSL files to bed

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

in_file:file

Input file

Output

name:type
description
pattern

bed

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.bed:file

Sorted BED file

*.{bed}

versions

versions.yml:file

File containing software versions

versions.yml