Convert BAM/GFF/GTF/GVF/PSL files to bed
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
in_file
:file
Input file
bed
*.bed
Sorted BED file
*.{bed}
versions_bedops
${task.process}
:string
The name of the process
bedops
The name of the tool
convert2bed --version | sed -n "s/.*version: *\([^ ]*\).*/\1/p"
:eval
The expression to obtain the version of the tool
versions
High-performance genomic feature operations.
