Description

Convert gtf format to bed format

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

gtf:file

A reference file in GTF format

*.{gtf,gtf.gz}

Output

name:type
description
pattern

bed

meta:file

A reference file in BED format

*.{bed}

*.bed:file

A reference file in BED format

*.{bed}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

gtf2bed
GPL v2

The gtf2bed script converts 1-based, closed [start, end] Gene Transfer Format v2.2 (GTF2.2) to sorted, 0-based, half-open [start-1, end) extended BED-formatted data.