modules/bedtools_genomecov
Computes histograms (default), per-base reports (-d) and BEDGRAPH (-bg) summaries of feature coverage (e.g., aligned sequences) for a given genome.
bedbamgenomecovbedtoolshistogram
Description
Computes histograms (default), per-base reports (-d) and BEDGRAPH (-bg) summaries of feature coverage (e.g., aligned sequences) for a given genome.
Input
Name (Type)
Description
Pattern
Number containing the scale factor for the output. Set to 1 to disable. Setting to a value other than 1 will also get the -bg bedgraph output format as this is required for this command switch
Tab-delimited table of chromosome names in the first column and chromosome sizes in the second column