Description

extract sequences in a FASTA file based on intervals defined in a feature file.

Input

Name (Type)
Description
Pattern

bed (file)

Bed feature file

*.{bed}

fasta (file)

Input fasta file

*.{fa,fasta}

Output

Name (Type)
Description
Pattern

fasta (file)

Output fasta file with extracted sequences

*.{fa}

versions (file)

File containing software versions

versions.yml

Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.