Description

Groups features in a BED file by given column(s) and computes summary statistics for each group to another column.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

bed (file)

Input BED file

*.{bed}

summary_column (integer)

Column to be summarized (1-based)

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

bed (file)

Grouped by bed file with combined features

*.{bed}

versions (file)

File containing software versions

versions.yml
maintainer
Github user mashehu
get in touch
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Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.

bedtools.readthedocs.io/en/latest bedtools.readthedocs.io/en/latest/content/tools/groupby 10.1093/bioinformatics/btq033