Description

Groups features in a BED file by given column(s) and computes summary statistics for each group to another column.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

bed:file

Input BED file

*.{bed}

summary_col:string

Column to summarize

Output

name:type
description
pattern

bed

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.bed:file

Grouped by bed file with combined features

*.{bed}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.