Calculate Jaccard statistic b/w two feature files.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input_a{:bash}
:file
VCF,GFF or BED file to use with the -a option
-a
*.{vcf,vcf.gz,bed,bed.gz,gff}
input_b{:bash}
VCF,GFF or BED file to use with the -b option
-b
meta2{:bash}
Groovy Map containing genome file information e.g. [ id:‘test’, single_end:false ]
genome_file{:bash}
A file containing all the contigs of the genome used to create the input files
*.{txt,sizes,fai}
tsv{:bash}
*.tsv{:bash}
TSV file containing the results
*.tsv
versions_bedtools{:bash}
${task.process}{:bash}
:string
The name of the process
bedtools{:bash}
The name of the tool
bedtools --version | sed -e 's/bedtools v//g'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
