Calculate Jaccard statistic b/w two feature files.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input_a
:file
VCF,GFF or BED file to use with the -a option
-a
*.{vcf,vcf.gz,bed,bed.gz,gff}
input_b
VCF,GFF or BED file to use with the -b option
-b
meta2
Groovy Map containing genome file information e.g. [ id:‘test’, single_end:false ]
genome_file
A file containing all the contigs of the genome used to create the input files
*.{txt,sizes,fai}
tsv
*.tsv
TSV file containing the results
versions_bedtools
${task.process}
:string
The name of the process
bedtools
The name of the tool
bedtools --version | sed -e 's/bedtools v//g'
:eval
The expression to obtain the version of the tool
versions
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
