Description

Calculate Jaccard statistic b/w two feature files.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

input_a:file

VCF,GFF or BED file to use with the -a option

*.{vcf,vcf.gz,bed,bed.gz,gff}

input_b:file

VCF,GFF or BED file to use with the -b option

*.{vcf,vcf.gz,bed,bed.gz,gff}

meta2:map

Groovy Map containing genome file information e.g. [ id:‘test’, single_end

]

genome_file:file

A file containing all the contigs of the genome used to create the input files

*.{txt,sizes,fai}

Output

name:type
description
pattern

tsv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tsv:file

TSV file containing the results

*.tsv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.