Description

Makes adjacent or sliding windows across a genome or BED file.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

regions (file)

BED file OR Genome details file ()

*.{bed,tab,fai}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

bed (file)

BED file containing the windows

*.bed
included in
radseq ssds
authors
Github user kevbrick Github user nvnieuwk
get in touch
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Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.

bedtools.readthedocs.io bedtools.readthedocs.io/en/latest/content/tools/makewindows.html 10.1093/bioinformatics/btq033