Allows one to screen for overlaps between two sets of genomic features.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
intervals1:file
BAM/BED/GFF/VCF
*.{bed|gff|vcf}
intervals2:file
meta2:map
Groovy Map containing reference chromosome sizes e.g. [ id:‘test’ ]
chrom_sizes:file
Chromosome sizes file
*{.sizes,.txt}
mapped
*.${extension}:file
File containing the description of overlaps found between the features in A and the features in B, with statistics
*.${extension}
versions
versions.yml:file
File containing software versions
versions.yml
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
