Description

combines overlapping or “book-ended” features in an interval file into a single feature which spans all of the combined features.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

Input BED file

*.{bed}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

Overlapped bed file with combined features

*.{bed}

versions (file)

File containing software versions

versions.yml
included in
cutandrun nascent radseq tfactivity viralrecon
maintainers
Github user edmundmiller
Github user sruthipsuresh
Github user drpatelh
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.

bedtools.readthedocs.io/en/latest/content/tools/merge