Description

Shifts each feature by specific number of bases

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bed:file

Input BED file

*.{bed}

meta2:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

chrom_sizes:file

Chromosome sizes file

*{.sizes,.txt,.fai}

Output

name:type
description
pattern

bed

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.bed:file

Shift BED file

*.{bed}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.