modules/bedtools_slop

Adds a specified number of bases in each direction (unique values may be specified for either -l or -r)

bedslopBedbedtools

https://github.com/nf-core/modules/[...]/modules/nf-core/bedtools/slop

Description

Adds a specified number of bases in each direction (unique values may be specified for either -l or -r)

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`bed:file`

Input BED file

*.{bed}

`sizes:file`

Chromosome sizes file

Output

name:type

description

pattern

`bed`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.bed:file`

Slopped BED file

*.{bed}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.

bedtools.readthedocs.io/en/latest/content/tools/slop

modules/bedtools_slop

Description

Input

meta:map

bed:file

sizes:file

Output

bed

meta:map

*.bed:file

versions

versions.yml:file

Tools

bedtools MIT

`meta:map`

`bed:file`

`sizes:file`

`bed`

`meta:map`

`*.bed:file`

`versions`

`versions.yml:file`

bedtools
MIT