Description

Finds overlaps between two sets of regions (A and B), removes the overlaps from A and reports the remaining portion of A.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

intervals1:file

BED/GFF/VCF

*.{bed|gff|vcf}

intervals2:file

BED/GFF/VCF

*.{bed|gff|vcf}

Output

name:type
description
pattern

bed

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.bed:file

File containing the difference between the two sets of features

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.

bedtools.readthedocs.io/en/latest/content/tools/subtract
included in
tfactivity
maintainer
Github user sidorov-si
get in touch
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