Combines multiple BedGraph files into a single file
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bedgraph{:bash}
:file
Input BedGraph file: four column BED format, with 4th column with numerical values: integer or real, positive or negative
*.{bedGraph,bedgraph}
meta2{:bash}
Groovy Map containing meta information for the reference chromosome sizes e.g. [ id:‘test’ ]
chrom_sizes{:bash}
Chromosome sizes file
*{.sizes,.txt}
bed{:bash}
*.bed{:bash}
Combined BED file with values from all bedGraph files
*.{bed}
versions_bedtools{:bash}
${task.process}{:bash}
:string
The name of the process
bedtools{:bash}
The name of the tool
bedtools --version | sed -e 's/bedtools v//g'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
