Combines multiple BedGraph files into a single file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bedgraph
:file
Input BedGraph file: four column BED format, with 4th column with numerical values: integer or real, positive or negative
*.{bedGraph,bedgraph}
meta2
Groovy Map containing meta information for the reference chromosome sizes e.g. [ id:‘test’ ]
chrom_sizes
Chromosome sizes file
*{.sizes,.txt}
bed
*.bed
Combined BED file with values from all bedGraph files
*.{bed}
versions_bedtools
${task.process}
:string
The name of the process
bedtools
The name of the tool
bedtools --version | sed -e 's/bedtools v//g'
:eval
The expression to obtain the version of the tool
versions
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
