Locate and tag duplicate reads in a BAM file
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
BAM/CRAM file
*.{bam,cram}
BAM file with duplicate reads marked/removed
*.{bam}
metrics
Duplicate metrics file generated by biobambam
*.{metrics.txt}
versions
File containing software versions
versions.yml
biobambam is a set of tools for early stage alignment file processing.
