Locate and tag duplicate reads in a BAM file
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
BAM/CRAM file
*.{bam,cram}
*.bam{:bash}
BAM file with duplicate reads marked/removed
*.{bam}
metrics{:bash}
*.metrics.txt{:bash}
Duplicate metrics file generated by biobambam
*.{metrics.txt}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
biobambam is a set of tools for early stage alignment file processing.
