Merge a list of sorted bam files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
List containing 1 or more bam files
${prefix}.bam{:bash}
Merged BAM file
*.bam
bam_index{:bash}
*.bai{:bash}
BAM index file
*.bai
checksum{:bash}
*.md5{:bash}
Checksum file
*.md5
versions_biobambam{:bash}
${task.process}{:bash}
:string
The name of the process
biobambam{:bash}
The name of the tool
bammerge --version |& sed '1!d; s/.*version //; s/.\$//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
biobambam is a set of tools for early stage alignment file processing.
