Merge a list of sorted bam files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
List containing 1 or more bam files
${prefix}.bam{:bash}
Merged BAM file
*.bam
bam_index{:bash}
*.bai{:bash}
BAM index file
*
checksum{:bash}
*.md5{:bash}
Checksum file
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
biobambam is a set of tools for early stage alignment file processing.
