Description

Merge a list of sorted bam files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

List containing 1 or more bam files

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

Merged BAM file

*.bam

bam_index (file)

BAM index file

*

checksum (file)

Checksum file

*

versions (file)

File containing software versions

versions.yml
maintainer
Github user matthdsm
get in touch
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Tools

biobambam
GPL v3

biobambam is a set of tools for early stage alignment file processing.

gitlab.com/german.tischler/biobambam2 gitlab.com/german.tischler/biobambam2/-/blob/master/README.md 10.1186/1751-0473-9-13