modules/biscuit_biscuitblaster
A fast, compact one-liner to produce duplicate-marked, sorted, and indexed BAM files using Biscuit
Description
A fast, compact one-liner to produce duplicate-marked, sorted, and indexed BAM files using Biscuit
Tools
biscuit MIT
A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data
samblaster MIT
samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. By default, samblaster reads SAM input from stdin and writes SAM to stdout.
samtools MIT
SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA.
