Description

Summarize and/or filter reads based on bisulfite conversion rate

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

BAM file contained mapped reads

bai (file)

BAM file index

index (directory)

Biscuit genome index directory (generated with ‘biscuit index’)

BiscuitIndex

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bsconv_bam (file)

Output BAM file containing filtered read alignments

*.{bam}

versions (file)

File containing software versions

versions.yml
maintainer
Github user njspix
get in touch
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Tools

biscuit
MIT

A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data

huishenlab.github.io/biscuit huishenlab.github.io/biscuit/docs/subcommand_help.html#biscuit-bsconv https://github.com/huishenlab/biscuit