modules/biscuit_index

Indexes a reference genome for use with Biscuit

biscuitDNA methylationWGBSscWGBSbisulfite sequencingindexreferencefasta

https://github.com/nf-core/modules/[...]/modules/nf-core/biscuit/index

Description

Indexes a reference genome for use with Biscuit

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`fasta`
`:file`

Input genome fasta file

Output

name:type

description

pattern

`index`

`meta`
`:directory`

Directory containing biscuit genome index

index

`BiscuitIndex`
`:directory`

Directory containing biscuit genome index

index

`versions_biscuit`

`${task.process}`
`:string`

The name of the process

`biscuit`
`:string`

The name of the tool

`biscuit version |& sed '1!d; s/^.*BISCUIT Version: //'`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`biscuit`
`:string`

The name of the tool

`biscuit version |& sed '1!d; s/^.*BISCUIT Version: //'`
`:eval`

The expression to obtain the version of the tool

Tools

biscuit
MIT

A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data

huishenlab.github.io/biscuit huishenlab.github.io/biscuit/docs/alignment https://github.com/huishenlab/biscuit

modules/biscuit_index

Description

Input

`meta`
`:map`

`fasta`
`:file`

Output

`index`

`meta`
`:directory`

`BiscuitIndex`
`:directory`

`versions_biscuit`

`${task.process}`
`:string`

`biscuit`
`:string`

`biscuit version |& sed '1!d; s/^.*BISCUIT Version: //'`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`biscuit`
`:string`

`biscuit version |& sed '1!d; s/^.*BISCUIT Version: //'`
`:eval`

Tools

biscuit
MIT

maintainers

get in touch

modules/biscuit_index

Description

Input

meta :map

fasta :file

Output

index

meta :directory

BiscuitIndex :directory

versions_biscuit

${task.process} :string

biscuit :string

biscuit version |& sed '1!d; s/^.*BISCUIT Version: //' :eval

Topics

versions

${task.process} :string

biscuit :string

biscuit version |& sed '1!d; s/^.*BISCUIT Version: //' :eval

Tools

biscuitMIT

maintainers

get in touch

`meta`
`:map`

`fasta`
`:file`

`index`

`meta`
`:directory`

`BiscuitIndex`
`:directory`

`versions_biscuit`

`${task.process}`
`:string`

`biscuit`
`:string`

`biscuit version |& sed '1!d; s/^.*BISCUIT Version: //'`
`:eval`

`versions`

`${task.process}`
`:string`

`biscuit`
`:string`

`biscuit version |& sed '1!d; s/^.*BISCUIT Version: //'`
`:eval`

biscuit
MIT