Description

Merges methylation information for opposite-strand C’s in a CpG context

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

Biscuit BED file (output of biscuit vcf2bed)

index (directory)

Biscuit genome index directory (generated with ‘biscuit index’)

BiscuitIndex

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

mergecg_bed (file)

Gzipped BED file with merged methylation information

*.bed.gz

versions (file)

File containing software versions

versions.yml
author
Github user njspix
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Tools

biscuit
MIT

A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data

huishenlab.github.io/biscuit huishenlab.github.io/biscuit/docs/methylextraction.html https://github.com/huishenlab/biscuit