Description

Merges methylation information for opposite-strand C’s in a CpG context

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bed:file

Biscuit BED file (output of biscuit vcf2bed)

meta2:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

Input genome fasta file

meta3:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

index:directory

Directory containing biscuit genome index

Output

name:type
description
pattern

bed

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.bed.gz:file

Gzipped BED file with merged methylation information

*.bed.gz

versions

versions.yml:file

File containing software versions

versions.yml

Tools

biscuit
MIT

A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data