modules/biscuit_qc
Perform basic quality control on a BAM file generated with Biscuit
biscuitDNA methylationWGBSscWGBSbisulfite sequencingindexBAMquality control
Output
name:type
description
pattern
Summary files containing the following information:
- CpG retention by position in read
- CpH retention by position in read
- Read duplication statistics
- Insert size distribution
- Distribution of mapping qualities
- Proportion of reads mapping to each strand
- Read-averaged cytosine conversion rate for CpA, CpC, CpG, and CpT
*.txt
Summary files containing the following information:
- CpG retention by position in read
- CpH retention by position in read
- Read duplication statistics
- Insert size distribution
- Distribution of mapping qualities
- Proportion of reads mapping to each strand
- Read-averaged cytosine conversion rate for CpA, CpC, CpG, and CpT
*.txt