Description

Summarizes methylation or SNV information from a Biscuit VCF in a standard-compliant BED file.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

Biscuit vcf file (output of biscuit pileup)

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

Gzipped BED file with methylation or SNV information

*.{bed.gz}

versions (file)

File containing software versions

versions.yml
author
Github user njspix
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Tools

biscuit
MIT

A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data

huishenlab.github.io/biscuit huishenlab.github.io/biscuit/docs/methylextraction.html https://github.com/huishenlab/biscuit