Relates methylation calls back to genomic cytosine contexts.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
coverage_file
A file containing methylation calls per position, in the format produced by bismark_methylation_extractor.
index
Bismark genome index directory
BismarkIndex
coverage
A file containing methylation calls per position.
*.cov.gz
report
Genomic cytosine context results.
*report.txt.gz
summary
Cyotosine context summary report.
*cytosine_context_summary.txt
versions
File containing software versions
versions.yml
Bismark is a tool to map bisulfite treated sequencing reads and perform methylation calling in a quick and easy-to-use fashion.
