Description

Converts a specified reference genome into two different bisulfite converted versions and indexes them for alignments.

Input

Name (Type)
Description
Pattern

fasta (file)

Input genome fasta file

Output

Name (Type)
Description
Pattern

index (dir)

Bismark genome index directory

BismarkIndex

versions (file)

File containing software versions

versions.yml
included in
methylseq
maintainer
Github user phue
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Tools

bismark
GPL-3.0-or-later

Bismark is a tool to map bisulfite treated sequencing reads and perform methylation calling in a quick and easy-to-use fashion.

github.com/FelixKrueger/Bismark github.com/FelixKrueger/Bismark[...]Docs 10.1093/bioinformatics/btr167