Description

Retrieve entries from a BLAST database

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

entry (string)

Entry identifier of sequence in database. It cannot be used along with entry_batch

entry_batch (file)

File with a list of entry identifiers of sequences in database (one identifier per line). It cannot be used along with entry

meta2 (map)

Groovy Map containing db information
e.g. [ id:‘test2’, single_end

]

db (file)

Input BLAST-indexed database

*.{fa.*,fasta.*}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Output fasta file (default format)

*.{fasta}

text (file)

Output text file (generic format if fasta not used, i.e. --outfmt is supplied to ext.args)

*.{txt}

versions (file)

File containing software versions

versions.yml
maintainer
Github user toniher
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Tools

blast
US-Government-Work

BLAST finds regions of similarity between biological sequences.

blast.ncbi.nlm.nih.gov/Blast.cgi blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Blastdocs 10.1016/S0022-2836(05)80360-2