Retrieve entries from a BLAST database
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
entry:string
Entry identifier of sequence in database. It cannot be used along with entry_batch
entry_batch:file
File with a list of entry identifiers of sequences in database (one identifier per line). It cannot be used along with entry
meta2:map
Groovy Map containing db information e.g. [ id:‘test2’, single_end
db:file
Input BLAST-indexed database
*.{fa.*,fasta.*}
fasta
*.fasta:file
Output fasta file (default format)
*.{fasta}
text
*.txt:file
Output text file (generic format if fasta not used, i.e. --outfmt is supplied to ext.args)
--outfmt
ext.args
*.{txt}
versions
versions.yml:file
File containing software versions
versions.yml
BLAST finds regions of similarity between biological sequences.
