Description

Queries a BLAST DNA database

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Input fasta file containing queries sequences

*.{fa,fasta,fa.gz,fasta.gz}

meta2 (map)

Groovy Map containing db information
e.g. [ id:‘test2’, single_end

]

db (directory)

Directory containing the blast database

*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

txt (file)

File containing blastn hits

*.txt

versions (file)

File containing software versions

versions.yml
included in
detaxizer phageannotator viralrecon
maintainers
Github user joseespinosa
Github user drpatelh
Github user vagkaratzas
get in touch
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Tools

blast
US-Government-Work

BLAST finds regions of similarity between biological sequences.

blast.ncbi.nlm.nih.gov/Blast.cgi blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Blastdocs 10.1016/S0022-2836(05)80360-2