Description

BLASTP (Basic Local Alignment Search Tool- Protein) compares an amino acid (protein) query sequence against a protein database

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

fasta (file)

Input fasta file containing queries sequences

*.{fa,fasta,fa.gz,fasta.gz}

meta2 (map)

Groovy Map containing db information
e.g. [ id:‘test2’, single_end

]

db (directory)

Directory containing the blast database

*

out_ext (string)

Specify the type of output file to be generated. xml corresponds to BLAST xml format.
tsv corresponds to BLAST tabular format. csv corresponds to BLAST comma separated format.

xml|tsv|csv

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

xml (file)

File containing blastp hits in XML format

*.{xml}

tsv (file)

File containing blastp hits in tabular format

*.{tsv}

csv (file)

File containing blastp hits in comma separated format

*.csv

versions (file)

File containing software versions

versions.yml
mantainer
Github user vagkaratzas
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Tools

blast
US-Government-Work

BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.

blast.ncbi.nlm.nih.gov/Blast.cgi blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Blastdocs10.1016/S0022-2836(05)80360-2