Description

Builds a BLAST database

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Input fasta file

*.{fa,fasta,fa.gz,fasta.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

db (directory)

Output directory containing blast database files

*

versions (file)

File containing software versions

versions.yml
included in
detaxizer phageannotator viralrecon
maintainers
Github user joseespinosa
Github user drpatelh
Github user vagkaratzas
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

blast
US-Government-Work

BLAST finds regions of similarity between biological sequences.

blast.ncbi.nlm.nih.gov/Blast.cgi blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Blastdocs 10.1016/S0022-2836(05)80360-2