Description

Queries a sequence subject

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

query (file)

Sequence file

*.{fasta,fasta.gz,fa,fa.gz,nib,2bit}

meta2 (map)

Groovy Map containing subject information
e.g. [ id:'test', single_end:false ]

subject (file)

Sequence file

*.{fa,nib,2bit}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

psl (file)

Search results

*.{psl}

Tools

blat
Free for academic, nonprofit and personal use

BLAT is a bioinformatics software tool which performs rapid mRNA/DNA and cross-species protein alignments.