Description

Queries a sequence subject

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

query:file

Sequence file

*.{fasta,fasta.gz,fa,fa.gz,nib,2bit}

meta2:map

Groovy Map containing subject information e.g. [ id:'test', single_end:false ]

subject:file

Sequence file

*.{fa,nib,2bit}

Output

name:type
description
pattern

psl

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.psl:file

Search results

*.{psl}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

blat
Free for academic, nonprofit and personal use

BLAT is a bioinformatics software tool which performs rapid mRNA/DNA and cross-species protein alignments.