modules/blat

Queries a sequence subject

blatsequencesearch

https://github.com/nf-core/modules/[...]/modules/nf-core/blat

Description

Queries a sequence subject

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`query:file`

Sequence file

*.{fasta,fasta.gz,fa,fa.gz,nib,2bit}

`meta2:map`

Groovy Map containing subject information e.g. [ id:'test', single_end:false ]

`subject:file`

Sequence file

*.{fa,nib,2bit}

Output

name:type

description

pattern

`psl`

`meta:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`*.psl:file`

Search results

*.{psl}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

blat
Free for academic, nonprofit and personal use

BLAT is a bioinformatics software tool which performs rapid mRNA/DNA and cross-species protein alignments.

kentinformatics.com kentinformatics.com/documentation 10.1101/gr.229202

modules/blat

Description

Input

meta:map

query:file

meta2:map

subject:file

Output

psl

meta:map

*.psl:file

versions

versions.yml:file

Tools

blat Free for academic, nonprofit and personal use

`meta:map`

`query:file`

`meta2:map`

`subject:file`

`psl`

`meta:map`

`*.psl:file`

`versions`

`versions.yml:file`

blat
Free for academic, nonprofit and personal use