Creates differing styles of blobplots depending on provided arguments.
Input
name:type
description
pattern
meta
:map
Groovy Map containing sample information and blobtk arguments
e.g. [ id:'sample1']
fasta
:file
Input assembly FASTA.
*.fasta
local_path
:directory
A path to a Blob Dir generated as part of a greater pipeline.
*/
online_path
:string
A webaddress to a Blob Dir e.g. hosted on a BlobToolKit Viewer.
*/
extra_args
:map
Groovy Map containing sample information and blobtk arguments
e.g. [name: 'VIEW', args: "-v"]
format
:string
Value indicating the output format.
e.g. "png" or "svg"
Output
name:type
description
pattern
png
meta
:map
Groovy Map containing sample information
e.g. [ id:'sample1' ]
*.png
:file
Blobplot PNG results of input arguments.
svg
meta
:map
Groovy Map containing sample information
e.g. [ id:'sample1' ]
*.svg
:file
Blobplot SVG results of input arguments.
versions_blobtk
${task.process}
:string
The name of the process
blobtk
:string
The name of the tool
blobtk --version | cut -d' ' -f2
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions
${task.process}
:string
The name of the process
blobtk
:string
The name of the tool
blobtk --version | cut -d' ' -f2
:eval
The expression to obtain the version of the tool
Tools
blobtk
MIT
BlobTk contains a set of core functions used by BlobToolKit tools.
Implemented in Rust, these functions are intended to be accessible
from the command line, as python modules and will include web assembly
code for use in javascript.
