Description

Builds bowtie index for reference genome

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information
e.g. [ id:‘test’, single_end

]

fasta (file)

Input genome fasta file

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information
e.g. [ id:‘test’, single_end

]

index (file)

Bowtie2 genome index files

*.bt2

versions (file)

File containing software versions

versions.yml

Tools

bowtie2
GPL-3.0-or-later

Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.