Description

Builds bowtie index for reference genome

Input

name:type
description
pattern

meta:map

Groovy Map containing reference information e.g. [ id:‘test’, single_end

]

fasta:file

Input genome fasta file

Output

name:type
description
pattern

index

meta:map

Groovy Map containing reference information e.g. [ id:‘test’, single_end

]

bowtie2:file

Bowtie2 genome index files

*.bt2

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bowtie2
GPL-3.0-or-later

Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.