Description

Create bowtie index for reference genome

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing information about the genome fasta
e.g. [ id:‘test’ ]

fasta (file)

Input genome fasta file

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing nformation about the genome fasta
e.g. [ id:‘test’ ]

index (file)

Folder containing bowtie genome index files

*.ebwt

versions (file)

File containing software versions

versions.yml

Tools

bowtie
Artistic-2.0

bowtie is a software package for mapping DNA sequences against a large reference genome, such as the human genome.