Re-estimate taxonomic abundance of metagenomic samples analyzed by kraken.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
kraken_report
TSV file with six columns coming from kraken2 output
*.{tsv}
database
Directory containing the kraken2/Bracken files for analysis
*
versions
File containing software versions
versions.yml
reports
TSV output report of the re-estimated abundances
txt
TXT file of bracken corrected results of Kraken2 report output
*.txt
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
