Combine output of metagenomic samples analyzed by bracken.
Input
name:type
description
pattern
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
input{:bash}
:file
List of output files from bracken
*
Output
name:type
description
pattern
txt{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
*.txt{:bash}
:file
Combined output in table format
*.txt
versions{:bash}
versions.yml{:bash}
:file
File containing software versions
versions.yml
Tools
bracken
GPL v3
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
